---
title: "Infant gut microbiota development in Bangladesh during the COVID-19 pandemic — trajectories study"
id: "pubmed-42678151"
canonical_url: "https://medichelpline.com/clinical-feed/pubmed-42678151"
content_type: "clinical_feed_article"
specialty: "Critical Care"
source_name: "PubMed / NCBI"
source_url: "https://pubmed.ncbi.nlm.nih.gov/42678151/"
doi: "10.1128/msystems.00101-26"
published_at: "2026-09-22T00:00:00.000Z"
evidence_level: "Journal Article"
license: "CC-BY-NC-4.0 / Informational Use"
---
# Infant gut microbiota development in Bangladesh during the COVID-19 pandemic — trajectories study
## Provenance & Clinical Metadata
- **Canonical URL:** https://medichelpline.com/clinical-feed/pubmed-42678151
- **Specialty:** [Critical Care](https://medichelpline.com/clinical-feed/critical-care.md)
- **Primary Source:** PubMed / NCBI
- **Source URL:** [Original Journal Publication](https://pubmed.ncbi.nlm.nih.gov/42678151/)
- **DOI:** [10.1128/msystems.00101-26](https://doi.org/10.1128%2Fmsystems.00101-26)
- **Published At:** 2026-09-22T00:00:00.000Z
- **Evidence Rating:** Journal Article
## Executive GIST (TL;DR)
- Study title: “Global and local trajectories of **infant gut microbiota** development in Bangladesh across the **COVID-19 pandemic**.” - Published in mSystems (2026 Sep 22; 11[9]: e0010126). DOI: 10.1128/msystems.00101-26. PubMed ID (PMID): 42678151. - Multi‑author, multi‑institution team with multiple contributors noted as having **contributed equally** (Papadaki MI; Falony G; Vieira‑Silva S; Tito RY; Rahman M; Raes J; Matthijnssens J, among others). - Affiliations span KU Leuven (Belgium), Wageningen University & Research (Netherlands), Université Catholique de Louvain (Belgium), VIB Center for Microbiology (Belgium), The Akkermansia Company (Belgium), University of Arkansas for Medical Sciences (USA), and the Infectious Diseases Division, International Centre for Diarrheal Disease Research, Dhaka (Bangladesh). - Manuscript labeled as a free article on PubMed and lists full‑text links (Atypon) available from the PubMed record. - The PubMed record provides bibliographic and author metadata but does not include the article abstract or study methods, sample size, outcomes, analyses, or conclusions in the provided snippet. - Because the PubMed page excerpt does not report study design, participant characteristics, microbiome assessment methods, timepoints, or results, those clinical and methodological details are not reported here and must be consulted in the full text for interpretation and application. - Key clinical and research terms present in the record: **infant gut microbiota**, **COVID‑19 pandemic**, **Bangladesh**, and journal **mSystems**.
## Clinical Analysis & Structured Key Points
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Epub 2026 Sep 1. # Global and local trajectories of infant gut microbiota development in Bangladesh across the COVID-19 pandemic [Maria Ioanna Papadaki](https://pubmed.ncbi.nlm.nih.gov/?term=Papadaki+MI&cauthor_id=42678151)[ 1 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-1 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory of Clinical and Epidemiological Virology, Leuven, Belgium."), [Gwen Falony](https://pubmed.ncbi.nlm.nih.gov/?term=Falony+G&cauthor_id=42678151)[#](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-equal-contrib-explanation "Contributed equally")[ 2 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-2 "Host-Microbe Interactomics, Department Animal Science, Wageningen University & Research, Wageningen, the Netherlands."), [Sara Vieira-Silva](https://pubmed.ncbi.nlm.nih.gov/?term=Vieira-Silva+S&cauthor_id=42678151)[#](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-equal-contrib-explanation "Contributed equally")[ 3 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-3 "Systems Biology and Multiomics Research Group, Institute of Experimental and Clinical Research \(IREC\), Université Catholique de Louvain, UCLouvain, Brussels, Belgium."), [Raul Yhossef Tito](https://pubmed.ncbi.nlm.nih.gov/?term=Tito+RY&cauthor_id=42678151)[#](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-equal-contrib-explanation "Contributed equally")[ 4 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-4 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Leuven, Belgium.")[ 5 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-5 "VIB, Center for Microbiology, Leuven, Belgium."), [Leen Rymenans](https://pubmed.ncbi.nlm.nih.gov/?term=Rymenans+L&cauthor_id=42678151)[ 6 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-6 "The Akkermansia Company SA, Mont-Saint-Guibert, Belgium."), [Jill Swinnen](https://pubmed.ncbi.nlm.nih.gov/?term=Swinnen+J&cauthor_id=42678151)[ 1 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-1 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory of Clinical and Epidemiological Virology, Leuven, Belgium."), [Lila Close](https://pubmed.ncbi.nlm.nih.gov/?term=Close+L&cauthor_id=42678151)[ 1 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-1 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory of Clinical and Epidemiological Virology, Leuven, Belgium."), [Jara Wagemans](https://pubmed.ncbi.nlm.nih.gov/?term=Wagemans+J&cauthor_id=42678151)[ 4 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-4 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Leuven, Belgium.")[ 5 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-5 "VIB, Center for Microbiology, Leuven, Belgium."), [Shafina Jahan](https://pubmed.ncbi.nlm.nih.gov/?term=Jahan+S&cauthor_id=42678151)[ 7 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-7 "Department of Cell Biology and Physiology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.")[ 8 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-8 "Infectious Diseases Division, International Centre for Diarrheal Disease Research, Dhaka, Mohakhali, Bangladesh."), [Muntasir Alam](https://pubmed.ncbi.nlm.nih.gov/?term=Alam+M&cauthor_id=42678151)[ 8 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-8 "Infectious Diseases Division, International Centre for Diarrheal Disease Research, Dhaka, Mohakhali, Bangladesh."), [Kamrun Nahar](https://pubmed.ncbi.nlm.nih.gov/?term=Nahar+K&cauthor_id=42678151)[ 8 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-8 "Infectious Diseases Division, International Centre for Diarrheal Disease Research, Dhaka, Mohakhali, Bangladesh."), [Mustafizur Rahman](https://pubmed.ncbi.nlm.nih.gov/?term=Rahman+M&cauthor_id=42678151)[#](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-equal-contrib-explanation "Contributed equally")[ 8 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-8 "Infectious Diseases Division, International Centre for Diarrheal Disease Research, Dhaka, Mohakhali, Bangladesh."), [Jeroen Raes](https://pubmed.ncbi.nlm.nih.gov/?term=Raes+J&cauthor_id=42678151)[#](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-equal-contrib-explanation "Contributed equally")[ 4 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-4 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Leuven, Belgium.")[ 5 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-5 "VIB, Center for Microbiology, Leuven, Belgium."), [Jelle Matthijnssens](https://pubmed.ncbi.nlm.nih.gov/?term=Matthijnssens+J&cauthor_id=42678151)[#](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-equal-contrib-explanation "Contributed equally")[ 1 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#full-view-affiliation-1 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory of Clinical and Epidemiological Virology, Leuven, Belgium.") Affiliations Expand ### Affiliations * 1 KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory of Clinical and Epidemiological Virology, Leuven, Belgium. * 2 Host-Microbe Interactomics, Department Animal Science, Wageningen University & Research, Wageningen, the Netherlands. * 3 Systems Biology and Multiomics Research Group, Institute of Experimental and Clinical Research (IREC), Université Catholique de Louvain, UCLouvain, Brussels, Belgium. * 4 KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Leuven, Belgium. * 5 VIB, Center for Microbiology, Leuven, Belgium. * 6 The Akkermansia Company SA, Mont-Saint-Guibert, Belgium. * 7 Department of Cell Biology and Physiology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA. * 8 Infectious Diseases Division, International Centre for Diarrheal Disease Research, Dhaka, Mohakhali, Bangladesh. # Contributed equally. * PMID: **42678151** * DOI: [ 10.1128/msystems.00101-26 ](https://doi.org/10.1128/msystems.00101-26) Free article Item in Clipboard # Global and local trajectories of infant gut microbiota development in Bangladesh across the COVID-19 pandemic Maria Ioanna Papadaki et al. mSystems. 2026. Free article Show details Display options Display options Format Abstract PubMed PMID mSystems Actions * [ Search in PubMed ](https://pubmed.ncbi.nlm.nih.gov/?term=%22mSystems%22%5Bjour%5D&sort=date&sort_order=desc) * [ Search in NLM Catalog ](https://www.ncbi.nlm.nih.gov/nlmcatalog?term=%22mSystems%22%5BTitle+Abbreviation%5D) * [ Add to Search ](https://pubmed.ncbi.nlm.nih.gov/42678151/) . 2026 Sep 22;11(9):e0010126. doi: 10.1128/msystems.00101-26. Epub 2026 Sep 1. ### Authors [Maria Ioanna Papadaki](https://pubmed.ncbi.nlm.nih.gov/?term=Papadaki+MI&cauthor_id=42678151)[ 1 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-1 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory of Clinical and Epidemiological Virology, Leuven, Belgium."), [Gwen Falony](https://pubmed.ncbi.nlm.nih.gov/?term=Falony+G&cauthor_id=42678151)[#](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-equal-contrib-explanation "Contributed equally")[ 2 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-2 "Host-Microbe Interactomics, Department Animal Science, Wageningen University & Research, Wageningen, the Netherlands."), [Sara Vieira-Silva](https://pubmed.ncbi.nlm.nih.gov/?term=Vieira-Silva+S&cauthor_id=42678151)[#](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-equal-contrib-explanation "Contributed equally")[ 3 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-3 "Systems Biology and Multiomics Research Group, Institute of Experimental and Clinical Research \(IREC\), Université Catholique de Louvain, UCLouvain, Brussels, Belgium."), [Raul Yhossef Tito](https://pubmed.ncbi.nlm.nih.gov/?term=Tito+RY&cauthor_id=42678151)[#](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-equal-contrib-explanation "Contributed equally")[ 4 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-4 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Leuven, Belgium.")[ 5 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-5 "VIB, Center for Microbiology, Leuven, Belgium."), [Leen Rymenans](https://pubmed.ncbi.nlm.nih.gov/?term=Rymenans+L&cauthor_id=42678151)[ 6 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-6 "The Akkermansia Company SA, Mont-Saint-Guibert, Belgium."), [Jill Swinnen](https://pubmed.ncbi.nlm.nih.gov/?term=Swinnen+J&cauthor_id=42678151)[ 1 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-1 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory of Clinical and Epidemiological Virology, Leuven, Belgium."), [Lila Close](https://pubmed.ncbi.nlm.nih.gov/?term=Close+L&cauthor_id=42678151)[ 1 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-1 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory of Clinical and Epidemiological Virology, Leuven, Belgium."), [Jara Wagemans](https://pubmed.ncbi.nlm.nih.gov/?term=Wagemans+J&cauthor_id=42678151)[ 4 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-4 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Leuven, Belgium.")[ 5 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-5 "VIB, Center for Microbiology, Leuven, Belgium."), [Shafina Jahan](https://pubmed.ncbi.nlm.nih.gov/?term=Jahan+S&cauthor_id=42678151)[ 7 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-7 "Department of Cell Biology and Physiology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.")[ 8 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-8 "Infectious Diseases Division, International Centre for Diarrheal Disease Research, Dhaka, Mohakhali, Bangladesh."), [Muntasir Alam](https://pubmed.ncbi.nlm.nih.gov/?term=Alam+M&cauthor_id=42678151)[ 8 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-8 "Infectious Diseases Division, International Centre for Diarrheal Disease Research, Dhaka, Mohakhali, Bangladesh."), [Kamrun Nahar](https://pubmed.ncbi.nlm.nih.gov/?term=Nahar+K&cauthor_id=42678151)[ 8 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-8 "Infectious Diseases Division, International Centre for Diarrheal Disease Research, Dhaka, Mohakhali, Bangladesh."), [Mustafizur Rahman](https://pubmed.ncbi.nlm.nih.gov/?term=Rahman+M&cauthor_id=42678151)[#](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-equal-contrib-explanation "Contributed equally")[ 8 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-8 "Infectious Diseases Division, International Centre for Diarrheal Disease Research, Dhaka, Mohakhali, Bangladesh."), [Jeroen Raes](https://pubmed.ncbi.nlm.nih.gov/?term=Raes+J&cauthor_id=42678151)[#](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-equal-contrib-explanation "Contributed equally")[ 4 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-4 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Leuven, Belgium.")[ 5 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-5 "VIB, Center for Microbiology, Leuven, Belgium."), [Jelle Matthijnssens](https://pubmed.ncbi.nlm.nih.gov/?term=Matthijnssens+J&cauthor_id=42678151)[#](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-equal-contrib-explanation "Contributed equally")[ 1 ](https://pubmed.ncbi.nlm.nih.gov/42678151/#short-view-affiliation-1 "KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory of Clinical and Epidemiological Virology, Leuven, Belgium.") ### Affiliations * 1 KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory of Clinical and Epidemiological Virology, Leuven, Belgium. * 2 Host-Microbe Interactomics, Department Animal Science, Wageningen University & Research, Wageningen, the Netherlands. * 3 Systems Biology and Multiomics Research Group, Institute of Experimental and Clinical Research (IREC), Université Catholique de Louvain, UCLouvain, Brussels, Belgium. * 4 KU Leuven, Department of Microbiology, Immunology and Transplantation, Rega Institute, Leuven, Belgium. * 5 VIB, Center for Microbiology, Leuven, Belgium. * 6 The Akkermansia Company SA, Mont-Saint-Guibert, Belgium. * 7 Department of Cell Biology and Physiology, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA. * 8 Infectious Diseases Division, International Centre for Diarrheal Disease Research, Dhaka, Mohakhali, Bangladesh. # Contributed equally. * PMID: **42678151** * DOI: [ 10
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